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Japanese Airlines
| Code | Airline | Headquarters | Alliance |
| FW | IBEX Airlines | Tokyo | |
| Amakusa Airlines | Kumamoto | ||
| NQ | Air Japan | Chiba | Star Alliance |
| EH | ANA WINGS | Tokyo | Star Alliance |
| OC | Oriental Air Bridge | Nagasaki | |
| J-AIR | Osaka | oneworld | |
| New Central Airservice | Ibaraki | ||
| 6J | Solaseed Air | Miyazaki | |
| BC | Skymark Airlines | Tokyo | |
| 7G | Star Flyer | Fukushima | |
| NH | All Nippon Airways | Tokyo | Star Alliance |
| 3X | Japan Air Commuter | Kagoshima | |
| KZ | Nippon Cargo Airlines | Chiba | |
| JL | Japan Airlines | Tokyo | oneworld |
| NU | Japan Transocean Air | Okinawa | oneworld |
| JH | Fuji Dream Airlines | Shizuoka | |
| Hokkaido Air System | Hokkaido | ||
| Ryukyu Air Commuter | Okinawa | ||
| Toho Air | Tokyo | ||
| HD | AIR DO | Hokkaido |